glbase is a flexible and multifunctional toolkit allowing the user to perform many common analyses on ChIP-seq, microarray and RNA-seq data
It's particularly useful for intersecting any data that can be expressed as a CSV file. Examples are RNA-seq microarray data, gene lists, Chip-seq location
... [More] lists and large next-generation sequencing data.
See the publication here:
http://www.cellregenerationjournal.com/content/3/1/1/abstract [Less]
A tool to perform Genome-Wide Association Studies written in Java. It is primarily meant to be used on desktop machines through its GUI (alternatively via scripts).
MiModD is an integrated solution for mapping-by-sequencing analysis of whole-genome sequencing (WGS) data from laboratory model organisms. It enables geneticists to identify the genetic mutations present in an organism starting from just raw WGS read data and a reference genome without the help of a
... [More] trained bioinformatician. Its linkage analysis engine NacreousMap represents a further development of and can be used as a drop-in replacement for CloudMap. [Less]
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